Python

Bioinformatics with Python Cookbook. Learn how to use modern Python bioinformatics libraries and applications to do cutting-edge research in computational biology - Second Edition

Tiago Antao

Bioinformatics is an active research field that uses a range of simple-to-advanced computations to extract valuable information from biological data.This book covers next-generation sequencing, genomics, metagenomics, population genetics, phylogenetics, and proteomics. You'll learn modern programming techniques to analyze large amounts of biological data. With the help of real-world examples, you'll convert, analyze, and visualize datasets using various Python tools and libraries.This book will help you get a better understanding of working with a Galaxy server, which is the most widely used bioinformatics web-based pipeline system. This updated edition also includes advanced next-generation sequencing filtering techniques. You'll also explore topics such as SNP discovery using statistical approaches under high-performance computing frameworks such as Dask and Spark.By the end of this book, you'll be able to use and implement modern programming techniques and frameworks to deal with the ever-increasing deluge of bioinformatics data.

Bioinformatics with Python Cookbook. Use modern Python libraries and applications to solve real-world computational biology problems - Third Edition

Tiago Antao

Bioinformatics is an active research field that uses a range of simple-to-advanced computations to extract valuable information from biological data, and this book will show you how to manage these tasks using Python.This updated third edition of the Bioinformatics with Python Cookbook begins with a quick overview of the various tools and libraries in the Python ecosystem that will help you convert, analyze, and visualize biological datasets. Next, you'll cover key techniques for next-generation sequencing, single-cell analysis, genomics, metagenomics, population genetics, phylogenetics, and proteomics with the help of real-world examples. You'll learn how to work with important pipeline systems, such as Galaxy servers and Snakemake, and understand the various modules in Python for functional and asynchronous programming. This book will also help you explore topics such as SNP discovery using statistical approaches under high-performance computing frameworks, including Dask and Spark. In addition to this, you’ll explore the application of machine learning algorithms in bioinformatics.By the end of this bioinformatics Python book, you'll be equipped with the knowledge you need to implement the latest programming techniques and frameworks, empowering you to deal with bioinformatics data on every scale.

Biostatistics with Python. Apply Python for biostatistics with hands-on biomedical and biotechnology projects

Darko Medin

This book leverages the author’s decade-long experience in biostatistics and data science to simplify the practical use of biostatistics with Python. The chapters show you how to clean and describe your data effectively, setting a solid foundation for accurate analysis and proficiency in biostatistical inference to help you draw meaningful conclusions from your data through hypothesis testing and effect size analysis.The book walks you through predictive modeling to harness the power of Python to create robust predictive analytics that can drive your research and professional projects forward. You'll explore clinical biostatistics, learn how to design studies, conduct survival analysis, and synthesize evidence from multiple studies with meta-analysis – skills that are crucial for making informed decisions based on comprehensive data reviews. The concluding chapters will enhance your ability to analyze biological variables, enabling you to perform detailed and accurate data analysis for biological research. This book's unique blend of biostatistics and Python helps you find practical solutions that make complex concepts easy to grasp and apply.By the end of this biostatistics book, you’ll have moved from theoretical knowledge to practical experience, allowing you to perform biostatistical analysis confidently and accurately.

Blender 3D By Example. A project-based guide to learning the latest Blender 3D, EEVEE rendering engine, and Grease Pencil - Second Edition

Oscar Baechler, Xury Greer

Blender is a powerful 3D creation package that supports every aspect of the 3D pipeline. With this book, you'll learn about modeling, rigging, animation, rendering, and much more with the help of some interesting projects.This practical guide, based on the Blender 2.83 LTS version, starts by helping you brush up on your basic Blender skills and getting you acquainted with the software toolset. You’ll use basic modeling tools to understand the simplest 3D workflow by customizing a Viking themed scene. You'll get a chance to see the 3D modeling process from start to finish by building a time machine based on provided concept art. You will design your first 2D character while exploring the capabilities of the new Grease Pencil tools. The book then guides you in creating a sleek modern kitchen scene using EEVEE, Blender’s new state-of-the-art rendering engine. As you advance, you'll explore a variety of 3D design techniques, such as sculpting, retopologizing, unwrapping, baking, painting, rigging, and animating to bring a baby dragon to life.By the end of this book, you'll have learned how to work with Blender to create impressive computer graphics, art, design, and architecture, and you'll be able to use robust Blender tools for your design projects and video games.

Building AI Applications with OpenAI APIs. Leverage ChatGPT, Whisper, and DALL-E APIs to build 10 innovative AI projects - Second Edition

Martin Yanev

Unlock the power of AI in your applications with ChatGPT with this practical guide that shows you how to seamlessly integrate OpenAI APIs into your projects, enabling you to navigate complex APIs and ensure seamless functionality with ease.This new edition is updated with key topics such as OpenAI Embeddings, which’ll help you understand the semantic relationships between words and phrases. You’ll find out how to use ChatGPT, Whisper, and DALL-E APIs through 10 AI projects using the latest OpenAI models, GPT-3.5, and GPT-4, with Visual Studio Code as the IDE. Within these projects, you’ll integrate ChatGPT with frameworks and tools such as Flask, Django, Microsoft Office APIs, and PyQt. You’ll get to grips with NLP tasks, build a ChatGPT clone, and create an AI code bug-fixing SaaS app. The chapters will also take you through speech recognition, text-to-speech capabilities, language translation, generating email replies, creating PowerPoint presentations, and fine-tuning ChatGPT, along with adding payment methods by integrating the ChatGPT API with Stripe.By the end of this book, you’ll be able to develop, deploy, and monetize your own groundbreaking applications by harnessing the full potential of ChatGPT APIs.

Building AI Intensive Python Applications. Create intelligent apps with LLMs and vector databases

Rachelle Palmer, Ben Perlmutter, Ashwin Gangadhar, Nicholas...

The era of generative AI is upon us, and this book serves as a roadmap to harness its full potential. With its help, you’ll learn the core components of the AI stack: large language models (LLMs), vector databases, and Python frameworks, and see how these technologies work together to create intelligent applications.The chapters will help you discover best practices for data preparation, model selection, and fine-tuning, and teach you advanced techniques such as retrieval-augmented generation (RAG) to overcome common challenges, such as hallucinations and data leakage. You’ll get a solid understanding of vector databases, implement effective vector search strategies, refine models for accuracy, and optimize performance to achieve impactful results. You’ll also identify and address AI failures to ensure your applications deliver reliable and valuable results. By evaluating and improving the output of LLMs, you’ll be able to enhance their performance and relevance.By the end of this book, you’ll be well-equipped to build sophisticated AI applications that deliver real-world value.

Building Big Data Pipelines with Apache Beam. Use a single programming model for both batch and stream data processing

Jan Lukavský

Apache Beam is an open source unified programming model for implementing and executing data processing pipelines, including Extract, Transform, and Load (ETL), batch, and stream processing.This book will help you to confidently build data processing pipelines with Apache Beam. You’ll start with an overview of Apache Beam and understand how to use it to implement basic pipelines. You’ll also learn how to test and run the pipelines efficiently. As you progress, you’ll explore how to structure your code for reusability and also use various Domain Specific Languages (DSLs). Later chapters will show you how to use schemas and query your data using (streaming) SQL. Finally, you’ll understand advanced Apache Beam concepts, such as implementing your own I/O connectors.By the end of this book, you’ll have gained a deep understanding of the Apache Beam model and be able to apply it to solve problems.

Building Business-Ready Generative AI Systems. Build Human-Centered AI Systems with Context Engineering, Agents, Memory, and LLMs for Enterprise

Denis Rothman

Standalone LLMs no longer deliver sufficient business value on their own. This guide moves beyond basic chatbots, showing you how to build agentic, ChatGPT-grade systems capable of sophisticated semantic and sentiment analysis, powered by context engineering.You'll design AI controller architectures with multi-user memory retention to dynamically adapt your system to diverse user and system inputs. You'll architect a Retrieval-Augmented Generation system with Pinecone to combine instruction-driven scenarios. Through context engineering, you’ll minimize token usage, maximize response quality, and create systems that reason across complex tasks with precision. You'll enhance your system’s intelligence with multimodal capabilities—image generation, voice interactions, and machine-driven reasoning—leveraging Chain-of-Thought and context chaining to address cross-domain automation challenges. You'll also integrate OpenAI’s suite and DeepSeek-R1 without disrupting your existing GenAISys ecosystem.With context engineering as the backbone, every step becomes a deliberate act of shaping model behavior. Your GenAISys will apply neuroscience-inspired insights to marketing strategies, predict human mobility, integrate smoothly into human workflows, and connect to live external data, all wrapped in a polished, investor-ready interface.